Mattering on what tag is on the side of the trans it is possible yours dont take the red stuff. If the fluid is filled enough the pump should prime right away > 1 minuteish. What worried me is that you started it without the converter being in all the way. You initially said you had bout 2mm free on the bottom of the converter, and now you had about 3mm... Not sure what to make of this. Usually in removing the TC you will have a loss of fluid, especially in trying to get the sucker back together.
I think before you do anything more that you contact Kirt Kohller, he is like the ZF king: (800)624-3876 ext 5735
or direct at (616)748-5735
Good luck with this!
95 E34 530I V2.37
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Those who make peaceful revolution impossible will make violent revolution inevitable.
John F. Kennedy